1EZW Oxidoreductase date May 12, 2000
title Structure Of Coenzyme F420 Dependent Tetrahydromethanopterin From Methanopyrus Kandleri
authors S.Shima, E.Warkentin, W.Grabarse, R.K.Thauer, U.Ermler
compound source
Molecule: Coenzyme F420-Dependent N5,N10- Methylenetetrahydromethanopterin Reductase;
Chain: A
 Organism_scientific: Methanopyrus Kandleri
Organism_taxid: 2320
symmetry Space Group: F 2 2 2
R_factor 0.198 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.200 144.100 152.100 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand CL, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of coenzyme F(420) dependent methylenetetrahydromethanopterin reductase from two methanogenic archaea., Shima S, Warkentin E, Grabarse W, Sordel M, Wicke M, Thauer RK, Ermler U, J Mol Biol 2000 Jul 21;300(4):935-50. PMID:10891279
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (1ezw.pdb1.gz) 230 Kb
  • LPC: Ligand-Protein Contacts for 1EZW
  • CSU: Contacts of Structural Units for 1EZW
  • Likely Quarternary Molecular Structure file(s) for 1EZW
  • Structure Factors (442 Kb)
  • Retrieve 1EZW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EZW from S2C, [Save to disk]
  • Re-refined 1ezw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1EZW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1EZW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1EZW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ezwa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ezw_A] [1ezw]
  • SWISS-PROT database: [Q8TXY4]
  • Domain organization of [MER_METKA] by SWISSPFAM
    • Other resources with information on 1EZW
  • Community annotation for 1EZW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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