1F3Y Hydrolase date Jun 06, 2000
title Solution Structure Of The Nudix Enzyme Diadenosine Tetraphos Hydrolase From Lupinus Angustifolius L.
authors J.D.Swarbrick, T.Bashtannyk, D.Maksel, X.R.Zhang, G.M.Blackburn, K.R.Gayler, P.R.Gooley
compound source
Molecule: Diadenosine 5',5'''-P1,P4-Tetraphosphate Hydrolas
Chain: A
Fragment: Residues 35-199
Ec: 3.6.1.17
Engineered: Yes
Mutation: Yes
Organism_scientific: Lupinus Angustifolius
Organism_common: Narrow-Leaved Blue Lupine
Organism_taxid: 3871
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-3
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.6.1.17 BRENDA
related structures by homologous chain: 1JKN
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe three-dimensional structure of the Nudix enzyme diadenosine tetraphosphate hydrolase from Lupinus angustifolius L., Swarbrick JD, Bashtannyk T, Maksel D, Zhang XR, Blackburn GM, Gayler KR, Gooley PR, J Mol Biol 2000 Oct 6;302(5):1165-77. PMID:11183782
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1093 Kb) [Save to disk]
  • Biological Unit Coordinates (1f3y.pdb1.gz) 43 Kb
  • CSU: Contacts of Structural Units for 1F3Y
  • Original NMR restraints for 1F3Y from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1F3Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1F3Y from S2C, [Save to disk]
  • View 1F3Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1F3Y
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1F3Y, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f3ya_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1f3y] [1f3y_A]
  • SWISS-PROT database: [O04841]
  • Domain organization of [O04841_LUPAN] by SWISSPFAM
  • Other resources with information on 1F3Y
  • Community annotation for 1F3Y at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science