1F75 Transferase date Jun 26, 2000
title Crystal Structure Of Undecaprenyl Diphosphate Synthase From Micrococcus Luteus B-P 26
authors M.Fujihashi, Y.W.Zhang, Y.Higuchi, X.Y.Li, T.Koyama, K.Miki
compound source
Molecule: Undecaprenyl Pyrophosphate Synthetase
Chain: A, B
Ec: 2.5.1.31
Engineered: Yes
Mutation: Yes
Organism_scientific: Micrococcus Luteus
Organism_taxid: 1270
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pmluex3
symmetry Space Group: C 1 2 1
R_factor 0.190 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
127.197 60.161 75.703 90.00 105.69 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand SO4 enzyme Transferase E.C.2.5.1.31 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of cis-prenyl chain elongating enzyme, undecaprenyl diphosphate synthase., Fujihashi M, Zhang YW, Higuchi Y, Li XY, Koyama T, Miki K, Proc Natl Acad Sci U S A 2001 Apr 10;98(8):4337-42. PMID:11287651
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (1f75.pdb1.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 1F75
  • CSU: Contacts of Structural Units for 1F75
  • Likely Quarternary Molecular Structure file(s) for 1F75
  • Retrieve 1F75 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1F75 from S2C, [Save to disk]
  • View 1F75 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1F75
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1F75, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f75a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1f75b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1f75_A] [1f75] [1f75_B]
  • SWISS-PROT database: [O82827]
  • Domain organization of [UPPS_MICLU] by SWISSPFAM
  • Other resources with information on 1F75
  • Community annotation for 1F75 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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