1F86	Transport Protein	date	Jun 29, 2000
title	Transthyretin Thr119met Protein Stabilisation
authors	M.P.Sebastiao
compound		source
Molecule: Transthyretin Thr119met Variant Chain: A, B Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pintr
symmetry	Space Group: P 21 21 2	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 42.680 85.770 63.690 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.10 Å
ligand	T44 BindingDB	enzyme
note	1F86 is a representative structure
related structures	by homologous chain: 1F41
Gene Ontology	Chain Function Process Component A, B hormone activity
Primary reference	Transthyretin stability as a key factor in amyloidogenesis: X-ray analysis at atomic resolution., Sebastiao MP, Lamzin V, Saraiva MJ, Damas AM, J Mol Biol 2001 Mar 2;306(4):733-44. PMID:11243784

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk] Biological Unit Coordinates (1f86.pdb1.gz) 44 Kb Biological Unit Coordinates (1f86.pdb2.gz) 86 Kb LPC: Ligand-Protein Contacts for 1F86 CSU: Contacts of Structural Units for 1F86 Likely Quarternary Molecular Structure file(s) for 1F86 Structure Factors (1310 Kb) Retrieve 1F86 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1F86 from S2C, [Save to disk] Re-refined 1f86 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1F86 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1F86

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1F86 1F86A 1F86B from the CEP Server. Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1F86, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1f86a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1f86b_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1f86_A] [1f86_B] [1f86] SWISS-PROT database: [P02766] Domain organization of [TTHY_HUMAN] by SWISSPFAM Domain found in 1F86: [TR_THY ] by SMART

Other resources with information on 1F86

Community annotation for 1F86 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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