1F9L Rna date Jul 11, 2000
title Solution Structure Of A 22-Nucleotide Hairpin Similar To The Region Of A Group I Ribozyme With Cobalt(III)Hexammine Comp The Gaaa Tetraloop
authors S.Rudisser, I.Tinoco Jr.
compound source
Molecule: 5'-R(Gpgpcpgpapapgpupcpgpapapapgpa Cpgpcpcp)-3';
Chain: A
Fragment: P5abc Domain
Engineered: Yes
 Synthetic: Yes
Other_details: The Rna Was Enzymatically Synthesized From A Synthetic Rna Template Using T7 Rna Polymerase
methodSolution NMR
note 1F9L supersedes 1EOR
Primary referenceSolution structure of Cobalt(III)hexammine complexed to the GAAA tetraloop, and metal-ion binding to G.A mismatches., Rudisser S, Tinoco I Jr, J Mol Biol 2000 Feb 4;295(5):1211-23. PMID:10653698
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (14 Kb) [Save to disk]
  • Biological Unit Coordinates (1f9l.pdb1.gz) 12 Kb
  • CSU: Contacts of Structural Units for 1F9L
  • Original NMR restraints for 1F9L from PDB
  • Retrieve 1F9L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1F9L from S2C, [Save to disk]
    • View 1F9L in 3D
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    • Visual 3D analysis of 1F9L
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1F9L, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1f9l_A] [1f9l]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1F9L
  • Community annotation for 1F9L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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