1F9Z	Lyase	date	Jul 11, 2000
title	Crystal Structure Of The Ni(II)-Bound Glyoxalase I From Esch Coli
authors	M.M.He, S.L.Clugston, J.F.Honek, B.W.Matthews
compound		source
Molecule: Glyoxalase I Chain: A, B Synonym: Lactoylglutathione Lyase Ec: 4.4.1.5 Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1 21 1	R_factor 0.205 R_Free 0.272
crystal cell	length a length b length c angle alpha angle beta angle gamma 46.047 56.478 46.705 90.00 95.44 90.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	NI	enzyme	Lyase E.C.4.4.1.5 BRENDA
related structures	by homologous chain: 1FA8
Gene Ontology	Chain Function Process Component A, B
Primary reference	Determination of the structure of Escherichia coli glyoxalase I suggests a structural basis for differential metal activation., He MM, Clugston SL, Honek JF, Matthews BW, Biochemistry 2000 Aug 1;39(30):8719-27. PMID:10913283

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk] Biological Unit Coordinates (1f9z.pdb1.gz) 45 Kb LPC: Ligand-Protein Contacts for 1F9Z CSU: Contacts of Structural Units for 1F9Z Likely Quarternary Molecular Structure file(s) for 1F9Z Structure Factors (269 Kb) Retrieve 1F9Z in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1F9Z from S2C, [Save to disk] Re-refined 1f9z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1F9Z in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1F9Z

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1F9Z 1F9ZA 1F9ZB from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1F9Z, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1f9za_, region A [Jmol] [rasmolscript] [script source]     - Domain d1f9zb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1f9z_B] [1f9z_A] [1f9z] SWISS-PROT database: [P0AC81] Domain organization of [LGUL_ECOLI] by SWISSPFAM

Other resources with information on 1F9Z

Community annotation for 1F9Z at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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