1FBZ	Transferase	date	Jul 17, 2000
title	Structure-Based Design Of A Novel, Osteoclast-Selective, Non Src Sh2 Inhibitor With In Vivo Anti-Resorptive Activity
authors	W.Shakespeare, M.Yang, R.Bohacek, F.Cerasoli, K.Stebbis, R.Sundar C.Vu, S.Pradeepan, C.Metcalf, C.Haraldson, T.Merry, D.Dalgarno, S M.Hatada, X.Lu, M.R.Van Schravendijk, S.Adams, S.Violette, J.Smi W.Guan, C.Bartlett, J.Herson, J.Iuliucci, M.Weigele, T.Sawyer
compound		source
Molecule: Proto-Oncogene Tyrosine-Protein Kinase Lck Chain: A, B Fragment: Sh2 Domain Ec: 2.7.1.112 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.230 R_Free 0.360
crystal cell	length a length b length c angle alpha angle beta angle gamma 44.870 56.260 102.770 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	CC1	enzyme	Transferase E.C.2.7.1.112 BRENDA
related structures	by homologous chain: 1CWE, 1LCK
Primary reference	Structure-based design of an osteoclast-selective, nonpeptide src homology 2 inhibitor with in vivo antiresorptive activity., Shakespeare W, Yang M, Bohacek R, Cerasoli F, Stebbins K, Sundaramoorthi R, Azimioara M, Vu C, Pradeepan S, Metcalf C 3rd, Haraldson C, Merry T, Dalgarno D, Narula S, Hatada M, Lu X, van Schravendijk MR, Adams S, Violette S, Smith J, Guan W, Bartlett C, Herson J, Iuliucci J, Weigele M, Sawyer T, Proc Natl Acad Sci U S A 2000 Aug 15;97(17):9373-8. PMID:10944210

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk] Biological Unit Coordinates (1fbz.pdb1.gz) 23 Kb Biological Unit Coordinates (1fbz.pdb2.gz) 23 Kb LPC: Ligand-Protein Contacts for 1FBZ CSU: Contacts of Structural Units for 1FBZ Likely Quarternary Molecular Structure file(s) for 1FBZ Retrieve 1FBZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1FBZ from S2C, [Save to disk]

View 1FBZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1FBZ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1FBZ, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1fbza_, region A [Jmol] [rasmolscript] [script source]     - Domain d1fbzb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1fbz_B] [1fbz_A] [1fbz] SWISS-PROT database: [P06239] Domain organization of [LCK_HUMAN] by SWISSPFAM Domain found in 1FBZ: [SH2 ] by SMART

Other resources with information on 1FBZ

Community annotation for 1FBZ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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