1FCY Gene Regulation date Jul 19, 2000
title Isotype Selectivity Of The Human Retinoic Acid Nuclear Recep The Complex With The Rarbetagamma-Selective Retinoid Cd564
authors B.P.Klaholz, A.Mitschler, D.Moras, Structural Proteomics In Eur (Spine)
compound source
Molecule: Retinoic Acid Receptor Gamma-1
Chain: A
Fragment: Ligand Binding Domain
Synonym: Rar-Gamma-1
Engineered: Yes
Other_details: Complexed With Cd564, Residue 564
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-15b
symmetry Space Group: P 41 21 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.849 59.849 155.158 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand 564, LMU BindingDB enzyme
related structures by homologous chain: 1FD0
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for isotype selectivity of the human retinoic acid nuclear receptor., Klaholz BP, Mitschler A, Moras D, J Mol Biol 2000 Sep 8;302(1):155-70. PMID:10964567
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (1fcy.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 1FCY
  • CSU: Contacts of Structural Units for 1FCY
  • Likely Quarternary Molecular Structure file(s) for 1FCY
  • Structure Factors (430 Kb)
  • Retrieve 1FCY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FCY from S2C, [Save to disk]
  • Re-refined 1fcy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1FCY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FCY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1FCY from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FCY, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fcya_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fcy_A] [1fcy]
  • SWISS-PROT database: [P13631]
  • Domain organization of [RARG_HUMAN] by SWISSPFAM
  • Domain found in 1FCY: [HOLI ] by SMART
  • Other resources with information on 1FCY
  • Community annotation for 1FCY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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