1FGE Blood Coagulation Inhibitor date Nov 28, 1995
title Epidermal Growth Factor (Egf) Subdomain Of Human Thrombomodu 14 Structures)
authors R.Hrabal, E.A.Komives, F.Ni
compound source
Molecule: Thrombomodulin
Chain: A
Fragment: C-Terminal Subdomain, Residues 407 - 426, Of 5th Growth Factor (Egf);
Engineered: Yes
Mutation: Yes
Other_details: Non-Native Disulfide Bond Between The Fourth (Cys 407) And The Sixth Cysteine (Cys 421)
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural resiliency of an EGF-like subdomain bound to its target protein, thrombin., Hrabal R, Komives EA, Ni F, Protein Sci 1996 Feb;5(2):195-203. PMID:8745396
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (1fge.pdb1.gz) 5 Kb
  • CSU: Contacts of Structural Units for 1FGE
  • Original NMR restraints for 1FGE from PDB
  • Retrieve 1FGE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FGE from S2C, [Save to disk]
  • View 1FGE in 3D
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  • Visual 3D analysis of 1FGE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FGE, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fge__, region [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fge_A] [1fge]
  • SWISS-PROT database: [P07204]
  • Domain organization of [TRBM_HUMAN] by SWISSPFAM
  • Other resources with information on 1FGE
  • Community annotation for 1FGE at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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