1FGY Signaling Protein date Jul 29, 2000
title Grp1 Ph Domain With Ins(1,3,4,5)P4
authors S.E.Lietzke, S.Bose, T.Cronin, J.Klarlund, A.Chawla, M.P.Czech, D.G.Lambright
compound source
Molecule: Grp1
Chain: A
Fragment: Pleckstrin Homology Domain (Residues 261 - 387)
Synonym: Arf1 Guanine Nucleotide Exchange Factor And Integrin Binding Protein Homolog;
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.213 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.300 107.000 36.900 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand 4IP, MSE enzyme
note 1FGY is a representative structure
related structures by homologous chain: 1U2B
Primary referenceStructural basis of 3-phosphoinositide recognition by pleckstrin homology domains., Lietzke SE, Bose S, Cronin T, Klarlund J, Chawla A, Czech MP, Lambright DG, Mol Cell 2000 Aug;6(2):385-94. PMID:10983985
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (1fgy.pdb1.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 1FGY
  • CSU: Contacts of Structural Units for 1FGY
  • Likely Quarternary Molecular Structure file(s) for 1FGY
  • Retrieve 1FGY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FGY from S2C, [Save to disk]
    • View 1FGY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1FGY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1FGY from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FGY, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fgya_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fgy_A] [1fgy]
  • SWISS-PROT database: [O08967]
  • Domain organization of [CYH3_MOUSE] by SWISSPFAM
  • Domain found in 1FGY: [PH ] by SMART
    • Other resources with information on 1FGY
  • Community annotation for 1FGY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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