1FJ2 Hydrolase date Aug 07, 2000
title Crystal Structure Of The Human Acyl Protein Thioesterase 1 A Resolution
authors Y.Devedjiev, Z.Dauter, S.Kuznetsov, T.Jones, Z.Derewenda
compound source
Molecule: Protein (Acyl Protein Thioesterase 1)
Chain: A, B
Ec: 3.1.4.39
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.183 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.590 127.890 39.660 90.00 102.80 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand BR enzyme Hydrolase E.C.3.1.4.39 BRENDA
note 1FJ2 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of the human acyl protein thioesterase I from a single X-ray data set to 1.5 A., Devedjiev Y, Dauter Z, Kuznetsov SR, Jones TL, Derewenda ZS, Structure Fold Des 2000 Nov 15;8(11):1137-46. PMID:11080636
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (1fj2.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (1fj2.pdb2.gz) 41 Kb
  • Biological Unit Coordinates (1fj2.pdb3.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 1FJ2
  • CSU: Contacts of Structural Units for 1FJ2
  • Likely Quarternary Molecular Structure file(s) for 1FJ2
  • Structure Factors (330 Kb)
  • Retrieve 1FJ2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FJ2 from S2C, [Save to disk]
  • Re-refined 1fj2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1FJ2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FJ2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1FJ2 1FJ2A 1FJ2B from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FJ2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fj2a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1fj2b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fj2] [1fj2_A] [1fj2_B]
  • SWISS-PROT database: [O75608]
  • Domain organization of [LYPA1_HUMAN] by SWISSPFAM
  • Other resources with information on 1FJ2
  • Community annotation for 1FJ2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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