1FJG Ribosome date Aug 08, 2000
title Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin
authors A.P.Carter, W.M.Clemons Jr., D.E.Brodersen, B.T.Wimberly, R.J.Morgan-Warren, V.Ramakrishnan
compound source
Molecule: 16s Ribosomal Rna
Chain: A
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: Fragment Of Messenger Rna
Chain: X
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S2
Chain: B
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S3
Chain: C
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S4
Chain: D
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S5
Chain: E
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S6
Chain: F
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S7
Chain: G
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S8
Chain: H
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S9
Chain: I
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S10
Chain: J
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S11
Chain: K
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S12
Chain: L
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S13
Chain: M
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S14
Chain: N
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S15
Chain: O
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S16
Chain: P
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S17
Chain: Q
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S18
Chain: R
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S19
Chain: S
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S20
Chain: T
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein Thx
Chain: V
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
symmetry Space Group: P 41 21 2
R_factor 0.221 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
402.001 402.001 176.489 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand MG, PAR, SCM, SRY, ZN enzyme
note 1FJG (Molecule of the Month:pdb10)
related structures by homologous chain: 1AN7, 1G1X, 1KUQ, 1RSS, 1XMQ
Gene
Ontology
ChainFunctionProcessComponent
B


C


D


E


F


G


H


I


J


K


L


M


N


O


P


Q


R


S


T


V


Primary referenceFunctional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics., Carter AP, Clemons WM, Brodersen DE, Morgan-Warren RJ, Wimberly BT, Ramakrishnan V, Nature 2000 Sep 21;407(6802):340-8. PMID:11014183
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (956 Kb) [Save to disk]
  • Biological Unit Coordinates (1fjg.pdb1.gz) 939 Kb
  • LPC: Ligand-Protein Contacts for 1FJG
  • CSU: Contacts of Structural Units for 1FJG
  • Likely Quarternary Molecular Structure file(s) for 1FJG
  • Structure Factors (2193 Kb)
  • Retrieve 1FJG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FJG from S2C, [Save to disk]
  • Re-refined 1fjg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1FJG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1FJG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FJG, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fjgb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1fjgc2, region C:107-207 [Jmol] [rasmolscript] [script source]
        - Domain d1fjgc1, region C:2-106 [Jmol] [rasmolscript] [script source]
        - Domain d1fjgd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1fjge2, region E:5-73 [Jmol] [rasmolscript] [script source]
        - Domain d1fjge1, region E:74-154 [Jmol] [rasmolscript] [script source]
        - Domain d1fjgf_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1fjgg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1fjgh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1fjgi_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1fjgj_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1fjgk_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1fjgl_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1fjgm_, region M [Jmol] [rasmolscript] [script source]
        - Domain d1fjgn_, region N [Jmol] [rasmolscript] [script source]
        - Domain d1fjgo_, region O [Jmol] [rasmolscript] [script source]
        - Domain d1fjgp_, region P [Jmol] [rasmolscript] [script source]
        - Domain d1fjgq_, region Q [Jmol] [rasmolscript] [script source]
        - Domain d1fjgr_, region R [Jmol] [rasmolscript] [script source]
        - Domain d1fjgs_, region S [Jmol] [rasmolscript] [script source]
        - Domain d1fjgt_, region T [Jmol] [rasmolscript] [script source]
        - Domain d1fjgv_, region V [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fjg_M] [1fjg_G] [1fjg_H] [1fjg_I] [1fjg_F] [1fjg_Q] [1fjg_O] [1fjg_X] [1fjg_D] [1fjg_S] [1fjg_T] [1fjg_E] [1fjg_B] [1fjg] [1fjg_A] [1fjg_K] [1fjg_P] [1fjg_C] [1fjg_N] [1fjg_R] [1fjg_V] [1fjg_J] [1fjg_L]
  • SWISS-PROT database: [Q5SHN7] [P80376] [Q5SHN3] [P80377] [Q5SHQ1] [Q5SJ76] [Q5SJH3] [Q5SHP7] [Q5SLQ0] [Q5SHP2] [P80380] [P80371] [P80372] [P80373] [Q5SHQ5] [Q5SLP8] [P17291] [Q5SHQ2] [P80374] [Q5SIH3]
  • Domain organization of [RS10_THET8] [RS11_THET8] [RS12_THET8] [RS13_THET8] [RS14Z_THET8] [RS15_THET8] [RS16_THET8] [RS17_THET8] [RS18_THET8] [RS19_THET8] [RS20_THET8] [RS2_THET8] [RS3_THET8] [RS4_THET8] [RS5_THET8] [RS6_THET8] [RS7_THET8] [RS8_THET8] [RS9_THET8] [RSHX_THET8] by SWISSPFAM
  • Domains found in 1FJG: [KH] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
    • Other resources with information on 1FJG
  • Community annotation for 1FJG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1FJG from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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