1FKL Rotamase date Aug 18, 1995
title Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin- Immunosuppressant Complex
authors K.P.Wilson, M.D.Sintchak, J.A.Thomson, M.A.Navia
compound source
Molecule: Fk506 Binding Protein
Chain: A
Synonym: Fkbp12, Fkbp
Ec: 5.2.1.8
Other_details: Mr 12,000 Daltons
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Thymus
symmetry Space Group: P 21 21 21
R_factor 0.181 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.900 49.500 55.200 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand RAP BindingDB enzyme Isomerase E.C.5.2.1.8 BRENDA
related structures by homologous chain: 1FKF, 2FKE
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceComparative X-ray structures of the major binding protein for the immunosuppressant FK506 (tacrolimus) in unliganded form and in complex with FK506 and rapamycin., Wilson KP, Yamashita MM, Sintchak MD, Rotstein SH, Murcko MA, Boger J, Thomson JA, Fitzgibbon MJ, Black JR, Navia MA, Acta Crystallogr D Biol Crystallogr. 1995 Jul 1;51(Pt 4):511-21. PMID:15299838
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (1fkl.pdb1.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 1FKL
  • CSU: Contacts of Structural Units for 1FKL
  • Likely Quarternary Molecular Structure file(s) for 1FKL
  • Retrieve 1FKL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FKL from S2C, [Save to disk]
  • View 1FKL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FKL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FKL, from MSDmotif at EBI
  • Genome occurence of 1FKL's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fkl__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fkl] [1fkl_A]
  • SWISS-PROT database: [P18203]
  • Domain organization of [FKB1A_BOVIN] by SWISSPFAM
  • Other resources with information on 1FKL
  • Community annotation for 1FKL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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