1FRD Electron Transport date Apr 14, 1993
title Molecular Structure Of The Oxidized, Recombinant, Heterocyst Ferredoxin From Anabaena 7120 Determined To 1.7 Angstroms R
authors B.L.Jacobson, Y.K.Chae, J.L.Markley, I.Rayment, H.M.Holden
compound source
Molecule: Heterocyst [2fe-2s] Ferredoxin
Chain: A
Engineered: Yes
 Organism_scientific: Nostoc Sp.
Organism_taxid: 103690
Strain: Pcc 7120
symmetry Space Group: P 65
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.200 44.200 80.600 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.70 Å
ligand FES enzyme
related structures by homologous chain: 1AWD
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMolecular structure of the oxidized, recombinant, heterocyst [2Fe-2S] ferredoxin from Anabaena 7120 determined to 1.7-A resolution., Jacobson BL, Chae YK, Markley JL, Rayment I, Holden HM, Biochemistry 1993 Jul 6;32(26):6788-93. PMID:8329401
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (20 Kb) [Save to disk]
  • Biological Unit Coordinates (1frd.pdb1.gz) 17 Kb
  • LPC: Ligand-Protein Contacts for 1FRD
  • CSU: Contacts of Structural Units for 1FRD
  • Likely Quarternary Molecular Structure file(s) for 1FRD
  • Retrieve 1FRD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FRD from S2C, [Save to disk]
    • View 1FRD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1FRD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FRD, from MSDmotif at EBI
  • Genome occurence of 1FRD's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1frd__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1frd] [1frd_A]
  • SWISS-PROT database: [P11053]
  • Domain organization of [FERH_ANASP] by SWISSPFAM
    • Other resources with information on 1FRD
  • Community annotation for 1FRD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1FRD from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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