1FW5 Viral Protein date Sep 21, 2000
title Solution Structure Of Membrane Binding Peptide Of Semliki Fo Mrna Capping Enzyme Nsp1
authors A.Lampio, I.Kilpelinen, S.Pesonen, K.Karhi, P.Auvinen, P.Somerhar L.Kriinen
compound source
Molecule: Nonstructural Protein Nsp1
Chain: A
Fragment: Residues 245-364 Of Nsp1
Engineered: Yes
 Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized. The Of The Peptide Is Naturally Found In Semliki Forest Virus (
methodSolution NMR
Primary referenceMembrane binding mechanism of an RNA virus-capping enzyme., Lampio A, Kilpelainen I, Pesonen S, Karhi K, Auvinen P, Somerharju P, Kaariainen L, J Biol Chem 2000 Dec 1;275(48):37853-9. PMID:10984480
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (7 Kb) [Save to disk]
  • Biological Unit Coordinates (1fw5.pdb1.gz) 5 Kb
  • CSU: Contacts of Structural Units for 1FW5
  • Retrieve 1FW5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FW5 from S2C, [Save to disk]
    • View 1FW5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1FW5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FW5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fw5a_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fw5] [1fw5_A]
  • SWISS-PROT database: [P08411]
  • Domain organization of [POLN_SFV] by SWISSPFAM
    • Other resources with information on 1FW5
  • Community annotation for 1FW5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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