1G6U CRYSTAL STRUCTURE OF A DOMAIN SWAPPED DIMER date
authors Ogihara, N.L., Ghirlanda, G., Bryson, J.W., Gingery, M., DeGrado, W.F., Eisenberg, D.
compound source
symmetry
R_factor
R_Free 0.2410000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.48
ligand SO4, TFA enzyme
Primary referenceDesign of three-dimensional domain-swapped dimers and fibrous oligomers., Ogihara NL, Ghirlanda G, Bryson JW, Gingery M, DeGrado WF, Eisenberg D, Proc Natl Acad Sci U S A 2001 Feb 13;98(4):1404-9. PMID:11171963
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (20 Kb) [Save to disk]
  • Biological Unit Coordinates (1g6u.pdb1.gz) 16 Kb
  • Biological Unit Coordinates (1g6u.pdb2.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 1G6U
  • CSU: Contacts of Structural Units for 1G6U
  • Likely Quarternary Molecular Structure file(s) for 1G6U
  • Structure Factors (124 Kb)
  • Retrieve 1G6U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1G6U from S2C, [Save to disk]
  • Re-refined 1g6u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1G6U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1G6U
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1G6U 1G6UA 1G6UB from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1G6U, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1g6ua_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1g6ub_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1g6u_B] [1g6u] [1g6u_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1G6U
  • Community annotation for 1G6U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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