1G77 Oxidoreductase date Nov 09, 2000
title X-Ray Structure Of Escherichia Coli Pyridoxine 5`-Phosphate Complexed With Pyridoxal 5'-Phosphate At 2.0 A Resolution
authors M.K.Safo, F.N.Musayev, M.L.Di Salvo, V.Schirch
compound source
Molecule: Pyridoxine 5`-Phosphate Oxidase
Chain: A
Ec: 1.4.3.5
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b
symmetry Space Group: P 31 2 1
R_factor 0.209 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.440 63.440 124.640 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand FMN, MSE, PLP, PO4 enzyme Oxidoreductase E.C.1.4.3.5 BRENDA
related structures by homologous chain: 1G76, 1JNW
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceX-ray structure of Escherichia coli pyridoxine 5'-phosphate oxidase complexed with pyridoxal 5'-phosphate at 2.0 A resolution., Safo MK, Musayev FN, di Salvo ML, Schirch V, J Mol Biol 2001 Jul 20;310(4):817-26. PMID:11453690
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (1g77.pdb1.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 1G77
  • CSU: Contacts of Structural Units for 1G77
  • Likely Quarternary Molecular Structure file(s) for 1G77
  • Structure Factors (123 Kb)
  • Retrieve 1G77 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1G77 from S2C, [Save to disk]
  • Re-refined 1g77 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1G77 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1G77
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1G77, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1g77a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1g77_A] [1g77]
  • SWISS-PROT database: [P0AFI7]
  • Domain organization of [PDXH_ECOLI] by SWISSPFAM
  • Other resources with information on 1G77
  • Community annotation for 1G77 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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