1GCU Oxidoreductase date Aug 08, 2000
title Crystal Structure Of Rat Biliverdin Reductase At 1.4 A
authors A.Kikuchi, S.Y.Park, Y.Shiro
compound source
Molecule: Biliverdin Reductase A
Chain: A
Ec: 1.3.1.24
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.219 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.682 70.487 87.866 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand
enzyme Oxidoreductase E.C.1.3.1.24 BRENDA
related structures by homologous chain: 1LC0, 1LC3
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of rat biliverdin reductase., Kikuchi A, Park SY, Miyatake H, Sun D, Sato M, Yoshida T, Shiro Y, Nat Struct Biol. 2001 Mar;8(3):221-5. PMID:11224565
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (1gcu.pdb1.gz) 52 Kb
  • CSU: Contacts of Structural Units for 1GCU
  • Likely Quarternary Molecular Structure file(s) for 1GCU
  • Retrieve 1GCU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GCU from S2C, [Save to disk]
  • View 1GCU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GCU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1GCU from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GCU, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gcua1, region A:1-128,A:247-292 [Jmol] [rasmolscript] [script source]
        - Domain d1gcua2, region A:129-246 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gcu] [1gcu_A]
  • SWISS-PROT database: [P46844]
  • Domain organization of [BIEA_RAT] by SWISSPFAM
  • Other resources with information on 1GCU
  • Community annotation for 1GCU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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