1GE7	Hydrolase	date	Oct 11, 2000
title	Zinc Peptidase From Grifola Frondosa
authors	T.Hori, T.Kumasaka, M.Yamamoto, T.Nonaka, N.Tanaka, Y.Hashimoto, T K.Takio
compound		source
Molecule: Peptidyl-Lys Metalloendopeptidase Chain: A, B Ec: 3.4.24.20		Organism_scientific: Grifola Frondosa Organism_taxid: 5627 Tissue: Fruiting Body
symmetry	Space Group: P 43	R_factor 0.179 R_Free 0.218
crystal cell	length a length b length c angle alpha angle beta angle gamma 30.202 30.202 308.049 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	MAN, ZN	enzyme	Hydrolase E.C.3.4.24.20 BRENDA
related structures	by homologous chain: 1G12, 1GE5
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure of a new 'aspzincin' metalloendopeptidase from Grifola frondosa: implications for the catalytic mechanism and substrate specificity based on several different crystal forms., Hori T, Kumasaka T, Yamamoto M, Nonaka N, Tanaka N, Hashimoto Y, Ueki U, Takio K, Acta Crystallogr D Biol Crystallogr 2001 Mar;57(Pt 3):361-8. PMID:11223512

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk] Biological Unit Coordinates (1ge7.pdb1.gz) 56 Kb LPC: Ligand-Protein Contacts for 1GE7 CSU: Contacts of Structural Units for 1GE7 Likely Quarternary Molecular Structure file(s) for 1GE7 Structure Factors (146 Kb) Retrieve 1GE7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1GE7 from S2C, [Save to disk] Re-refined 1ge7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1GE7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1GE7

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1GE7, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ge7a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1ge7b_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ge7_A] [1ge7_B] [1ge7] SWISS-PROT database: [P81054] Domain organization of [PLMP_GRIFR] by SWISSPFAM Domain found in 1GE7: [Aspzincin_M35 ] by SMART

Other resources with information on 1GE7

Community annotation for 1GE7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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