1GJP	Dehydratase	date	Aug 01, 2001
title	Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid Dehydrat 4-Oxosebacic Acid
authors	P.T.Erskine, L.Coates, R.Newbold, A.A.Brindley, S.P.Wood, M.J.War J.B.Cooper, P.M.Shoolingin-Jordan, R.Neier
compound		source
Molecule: 5-Aminolaevulinic Acid Dehydratase Chain: A Synonym: Alad, Porphobilinogen Synthase Ec: 4.2.1.24 Engineered: Yes Other_details: Schiff-Base Link Between 4-Oxosebacic Acid S (Het Group A363) And Lysine 263		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Strain: Ns1(Jm109pns1) Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: I 4 2 2	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 103.500 103.500 168.200 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	4OX, ZN	enzyme	Lyase E.C.4.2.1.24 BRENDA
related structures	by homologous chain: 1H7O, 1H7R
Gene Ontology	Chain Function Process Component A
Primary reference	The X-ray structure of yeast 5-aminolaevulinic acid dehydratase complexed with two diacid inhibitors., Erskine PT, Coates L, Newbold R, Brindley AA, Stauffer F, Wood SP, Warren MJ, Cooper JB, Shoolingin-Jordan PM, Neier R, FEBS Lett 2001 Aug 17;503(2-3):196-200. PMID:11513881

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk] Biological Unit Coordinates (1gjp.pdb1.gz) 496 Kb LPC: Ligand-Protein Contacts for 1GJP CSU: Contacts of Structural Units for 1GJP Likely Quarternary Molecular Structure file(s) for 1GJP Structure Factors (674 Kb) Retrieve 1GJP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1GJP from S2C, [Save to disk] Re-refined 1gjp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1GJP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1GJP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1GJP, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1gjpa_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1gjp] [1gjp_A] SWISS-PROT database: [P05373] Domain organization of [HEM2_YEAST] by SWISSPFAM Domain found in 1GJP: [ALAD ] by SMART

Other resources with information on 1GJP

Community annotation for 1GJP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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