1GKY Transferase date Dec 23, 1991
title Refined Structure Of The Complex Between Guanylate Kinase And Its Substrate Gmp At 2.0 Angstroms Resolution
authors T.Stehle, G.E.Schulz
compound source
Molecule: Guanylate Kinase
Chain: A
Ec: 2.7.4.8
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
symmetry Space Group: P 43 21 2
R_factor 0.173 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.800 50.800 155.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 5GP, ACE, SO4 enzyme Transferase E.C.2.7.4.8 BRENDA
related structures by homologous chain: 1EX6, 1EX7
Gene
Ontology
ChainFunctionProcessComponent
A
  • guanylate kinase activity


    • Primary referenceRefined structure of the complex between guanylate kinase and its substrate GMP at 2.0 A resolution., Stehle T, Schulz GE, J Mol Biol 1992 Apr 20;224(4):1127-41. PMID:1314905
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (1gky.pdb1.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 1GKY
  • CSU: Contacts of Structural Units for 1GKY
  • Likely Quarternary Molecular Structure file(s) for 1GKY
  • Structure Factors (79 Kb)
  • Retrieve 1GKY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GKY from S2C, [Save to disk]
  • Re-refined 1gky structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1GKY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1GKY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GKY, from MSDmotif at EBI
  • Genome occurence of 1GKY's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gky__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gky] [1gky_A]
  • SWISS-PROT database: [P15454]
  • Domain organization of [KGUA_YEAST] by SWISSPFAM
  • Domain found in 1GKY: [GuKc ] by SMART
    • Other resources with information on 1GKY
  • Community annotation for 1GKY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1GKY from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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