1GYZ Ribosomal Protein date May 02, 2002
title Bacterial Ribosomal Protein L20 From Aquifex Aeolicus
authors S.Raibaud, I.Lebars, F.Bontems, F.Dardel
compound source
Molecule: 50s Ribosomal Protein L20
Chain: A
Fragment: Residues 59-118
Engineered: Yes
 Organism_scientific: Aquifex Aeolicus
Organism_taxid: 224324
Strain: Vf5
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Pubs520
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11c
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNMR structure of bacterial ribosomal protein l20: implications for ribosome assembly and translational control., Raibaud S, Lebars I, Guillier M, Chiaruttini C, Bontems F, Rak A, Garber M, Allemand F, Springer M, Dardel F, J Mol Biol 2002 Oct 11;323(1):143-51. PMID:12368106
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (315 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1GYZ
  • Original NMR restraints for 1GYZ from PDB
  • Retrieve 1GYZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GYZ from S2C, [Save to disk]
    • View 1GYZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1GYZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GYZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gyza_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gyz_A] [1gyz]
  • SWISS-PROT database: [O67086]
  • Domain organization of [RL20_AQUAE] by SWISSPFAM
    • Other resources with information on 1GYZ
  • Community annotation for 1GYZ at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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