1H0B Hydrolase date Jun 17, 2002
title Endoglucanase Cel12a From Rhodothermus Marinus
authors S.J.Crennell, G.O.Hreggvidsson, E.Nordberg-Karlsson
compound source
Molecule: Cellulase
Chain: A, B
Fragment: Catalytic Domain, Residues 38-260
Ec: 3.2.1.4
Engineered: Yes
Organism_scientific: Rhodothermus Marinus
Organism_taxid: 29549
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_variant: Lambda(De3)-Lysogen
Expression_system_vector: Pet25b(+)
Expression_system_plasmid: Pet25delta(Spl)
symmetry Space Group: P 21 21 21
R_factor 0.173 R_Free 0.194
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.099 67.779 132.262 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand EPE enzyme Hydrolase E.C.3.2.1.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe structure of Rhodothermus marinus Cel12A, a highly thermostable family 12 endoglucanase, at 1.8 A resolution., Crennell SJ, Hreggvidsson GO, Nordberg Karlsson E, J Mol Biol 2002 Jul 19;320(4):883-97. PMID:12095262
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (1h0b.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (1h0b.pdb2.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 1H0B
  • CSU: Contacts of Structural Units for 1H0B
  • Likely Quarternary Molecular Structure file(s) for 1H0B
  • Structure Factors (323 Kb)
  • Retrieve 1H0B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1H0B from S2C, [Save to disk]
  • Re-refined 1h0b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1H0B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1H0B
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1H0B, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1h0ba_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1h0bb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1h0b_B] [1h0b_A] [1h0b]
  • SWISS-PROT database: [O33897]
  • Domain organization of [O33897_RHOMR] by SWISSPFAM
  • Other resources with information on 1H0B
  • Community annotation for 1H0B at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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