1H1I Oxidoreductase date Jul 15, 2002
title Crystal Structure Of Quercetin 2,3-Dioxygenase Anaerobically With The Substrate Quercetn
authors R.A.Steiner, B.W.Dijkstra
compound source
Molecule: Quercetin 2,3-Dioxygenase
Chain: A, B, C, D
Ec: 1.13.11.24
Engineered: Yes
Organism_scientific: Aspergillus Japonicus
Organism_taxid: 34381
Expression_system: Aspergillus Awamori
Expression_system_taxid: 105351
symmetry Space Group: P 1 21 1
R_factor 0.148 R_Free 0.183
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.298 55.745 124.163 90.00 98.39 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand CU, MPD, NAG, QUE enzyme Oxidoreductase E.C.1.13.11.24 BRENDA
related structures by homologous chain: 1GQG, 1H1M
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceAnaerobic enzyme.substrate structures provide insight into the reaction mechanism of the copper-dependent quercetin 2,3-dioxygenase., Steiner RA, Kalk KH, Dijkstra BW, Proc Natl Acad Sci U S A 2002 Dec 24;99(26):16625-30. Epub 2002 Dec 16. PMID:12486225
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (254 Kb) [Save to disk]
  • Biological Unit Coordinates (1h1i.pdb1.gz) 126 Kb
  • Biological Unit Coordinates (1h1i.pdb2.gz) 124 Kb
  • LPC: Ligand-Protein Contacts for 1H1I
  • CSU: Contacts of Structural Units for 1H1I
  • Likely Quarternary Molecular Structure file(s) for 1H1I
  • Structure Factors (1089 Kb)
  • Retrieve 1H1I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1H1I from S2C, [Save to disk]
  • Re-refined 1h1i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1H1I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1H1I
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1H1I, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1h1ia_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1h1ib_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1h1ic_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1h1id_, region D [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1h1i_A] [1h1i_D] [1h1i_C] [1h1i_B] [1h1i]
  • SWISS-PROT database: [Q7SIC2]
  • Domain organization of [QDOI_ASPJA] by SWISSPFAM
  • Other resources with information on 1H1I
  • Community annotation for 1H1I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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