1H9I Hydrolase Inhibitor date Mar 12, 2001
title Complex Of Eeti-II Mutant With Porcine Trypsin
authors R.Kraetzner, A.Wentzel, H.Kolmar, I.Uson
compound source
Molecule: Trypsin
Chain: E
Ec: 3.4.21.4
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
Organ: Pancreas
Secretion: Saliva
Other_details: Sigma

Molecule: Trypsin Inhibitor II
Chain: I
Synonym: Eeti-II
Engineered: Yes
Mutation: Yes
Other_details: C-Terminal Tag Of 6 Histidines

Synthetic: Yes
Organism_scientific: Ecballium Elaterium
Organism_common: Squirting Cucumber
Organism_taxid: 3679
symmetry Space Group: I 4
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
139.862 139.862 33.667 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CA enzyme Hydrolase E.C.3.4.21.4 BRENDA
related structures by homologous chain: 1EJM, 1H9H, 1V6D
Gene
Ontology
ChainFunctionProcessComponent
E


I
  • endopeptidase inhibitor acti...
  • serine-type endopeptidase in...


  • Primary referenceStructure of Ecballium elaterium trypsin inhibitor II (EETI-II): a rigid molecular scaffold., Kratzner R, Debreczeni JE, Pape T, Schneider TR, Wentzel A, Kolmar H, Sheldrick GM, Uson I, Acta Crystallogr D Biol Crystallogr. 2005 Sep;61(Pt 9):1255-62. Epub 2005, Aug 16. PMID:16131759
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (1h9i.pdb1.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 1H9I
  • CSU: Contacts of Structural Units for 1H9I
  • Likely Quarternary Molecular Structure file(s) for 1H9I
  • Structure Factors (465 Kb)
  • Retrieve 1H9I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1H9I from S2C, [Save to disk]
  • Re-refined 1h9i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1H9I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1H9I
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1H9I, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1h9ie_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1h9ii_, region I [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1h9i] [1h9i_E] [1h9i_I]
  • SWISS-PROT database: [P12071] [P00761]
  • Domain organization of [ITR2_ECBEL] [TRYP_PIG] by SWISSPFAM
  • Domains found in 1H9I: [PTI] [Tryp_SPc ] by SMART
  • Other resources with information on 1H9I
  • Community annotation for 1H9I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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