1HG3 Isomerase date Dec 12, 2000
title Crystal Structure Of Tetrameric Tim From Pyrococcus Woesei.
authors H.Walden, G.S.Bell, R.J.M.Russell, B.Siebers, R.Hensel, G.L.Taylo
compound source
Molecule: Triosephosphate Isomerase
Chain: A, B, C, D, E, F, G, H
Ec: 5.3.1.1
Engineered: Yes
Other_details: 2-Carboxyethylphosphonic Acid In The Active
Organism_scientific: Pyrococcus Woesei
Organism_taxid: 2262
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834
symmetry Space Group: P 1 21 1
R_factor 0.254 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.000 89.100 145.100 90.00 92.80 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand 3PP enzyme Isomerase E.C.5.3.1.1 BRENDA
related structures by homologous chain: 1VA4
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceTiny TIM: a small, tetrameric, hyperthermostable triosephosphate isomerase., Walden H, Bell GS, Russell RJ, Siebers B, Hensel R, Taylor GL, J Mol Biol 2001 Mar 2;306(4):745-57. PMID:11243785
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (262 Kb) [Save to disk]
  • Biological Unit Coordinates (1hg3.pdb1.gz) 130 Kb
  • Biological Unit Coordinates (1hg3.pdb2.gz) 131 Kb
  • LPC: Ligand-Protein Contacts for 1HG3
  • CSU: Contacts of Structural Units for 1HG3
  • Likely Quarternary Molecular Structure file(s) for 1HG3
  • Retrieve 1HG3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HG3 from S2C, [Save to disk]
  • View 1HG3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HG3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HG3, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hg3a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1hg3b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1hg3c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1hg3d_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1hg3e_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1hg3f_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1hg3g_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1hg3h_, region H [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hg3_A] [1hg3_G] [1hg3_H] [1hg3_C] [1hg3_B] [1hg3] [1hg3_D] [1hg3_E] [1hg3_F]
  • SWISS-PROT database: [P62003]
  • Domain organization of [TPIS_PYRWO] by SWISSPFAM
  • Other resources with information on 1HG3
  • Community annotation for 1HG3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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