1HHV Viral Protein date Dec 06, 1998
title Solution Structure Of Virus Chemokine Vmip-II
authors W.Shao, E.Fernandez, J.M.Navenot, J.Wilken, D.A.Thompson, S.Pepip B.I.Schweitzer, E.Lolis
compound source
Molecule: Virus Chemokine Vmip-II
Chain: A
Synonym: Orf K4; Vmip-II; Macrophage Inflammatory Protein 1 Homolog;
Engineered: Yes
 Synthetic: Yes
Other_details: Sequence From Human Herpesvirus 8
methodSolution NMR
ligand MSE enzyme
related structures by homologous chain: 1HFN, 1VMP
Gene
Ontology
ChainFunctionProcessComponent
A
  • cytokine activity
  • chemokine activity


    • Primary referenceCCR2 and CCR5 receptor-binding properties of herpesvirus-8 vMIP-II based on sequence analysis and its solution structure., Shao W, Fernandez E, Sachpatzidis A, Wilken J, Thompson DA, Schweitzer BI, Lolis E, Eur J Biochem 2001 May;268(10):2948-59. PMID:11358512
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (484 Kb) [Save to disk]
  • Biological Unit Coordinates (1hhv.pdb1.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 1HHV
  • CSU: Contacts of Structural Units for 1HHV
  • Retrieve 1HHV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HHV from S2C, [Save to disk]
    • View 1HHV in 3D
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    • Visual 3D analysis of 1HHV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HHV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hhva_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hhv] [1hhv_A]
  • SWISS-PROT database: [Q98157]
  • Domain organization of [VMI2_HHV8] by SWISSPFAM
  • Domain found in 1HHV: [SCY ] by SMART
    • Other resources with information on 1HHV
  • Community annotation for 1HHV at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
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