1HLV	Dna Binding Protein Dna	date	Dec 04, 2000
title	Crystal Structure Of Cenp-B(1-129) Complexed With The Cenp-B
authors	Y.Tanaka, O.Nureki, H.Kurumizaka, S.Fukai, S.Kawaguchi, M.Ikuta, J T.Okazaki, S.Yokoyama, Riken Structural Genomicsproteomics I (Rsgi)
compound		source
Molecule: Cenp-B Box Dna Chain: B Engineered: Yes		Synthetic: Yes Other_details: This Sequence Occurs Naturally In Humans.
Molecule: Cenp-B Box Dna Chain: C Engineered: Yes		Synthetic: Yes Other_details: This Sequence Occurs Naturally In Humans.
Molecule: Major Centromere Autoantigen B Chain: A Fragment: Dna Binding Domain Synonym: Cenp-B Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cenp-B Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm109(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15d
symmetry	Space Group: P 31 1 2	R_factor 0.222 R_Free 0.260
crystal cell	length a length b length c angle alpha angle beta angle gamma 83.374 83.374 139.021 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.50 Å
related structures	by homologous chain: 1BW6
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of the CENP-B protein-DNA complex: the DNA-binding domains of CENP-B induce kinks in the CENP-B box DNA., Tanaka Y, Nureki O, Kurumizaka H, Fukai S, Kawaguchi S, Ikuta M, Iwahara J, Okazaki T, Yokoyama S, EMBO J 2001 Dec 3;20(23):6612-8. PMID:11726497

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk] Biological Unit Coordinates (1hlv.pdb1.gz) 40 Kb CSU: Contacts of Structural Units for 1HLV Likely Quarternary Molecular Structure file(s) for 1HLV Structure Factors (133 Kb) Retrieve 1HLV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1HLV from S2C, [Save to disk] Re-refined 1hlv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1HLV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1HLV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1HLV, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1hlva1, region A:1-66 [Jmol] [rasmolscript] [script source]     - Domain d1hlva2, region A:67-131 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1hlv_A] [1hlv_C] [1hlv] [1hlv_B] SWISS-PROT database: [P07199] Domain organization of [CENPB_HUMAN] by SWISSPFAM Domain found in 1HLV: [CENPB ] by SMART

Other resources with information on 1HLV

Community annotation for 1HLV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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