1HZ6 Protein Binding date Jan 23, 2001
title Crystal Structures Of The B1 Domain Of Protein L From Peptostreptococcus Magnus With A Tyrosine To Tryptophan Sub
authors J.W.O'Neill, D.E.Kim, D.Baker, K.Y.J.Zhang
compound source
Molecule: Protein L
Chain: A, B, C
Fragment: B1 Domain
Synonym: Ig Kappa Light Chain-Binding Protein
Engineered: Yes
Mutation: Yes
Organism_scientific: Finegoldia Magna
Organism_taxid: 334413
Strain: Atcc 29328
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3a
symmetry Space Group: P 21 21 21
R_factor 0.193 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.611 54.020 95.069 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
related structures by homologous chain: 1K51
Primary referenceStructures of the B1 domain of protein L from Peptostreptococcus magnus with a tyrosine to tryptophan substitution., O'Neill JW, Kim DE, Baker D, Zhang KY, Acta Crystallogr D Biol Crystallogr 2001 Apr;57(Pt 4):480-7. PMID:11264576
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (1hz6.pdb1.gz) 13 Kb
  • Biological Unit Coordinates (1hz6.pdb2.gz) 12 Kb
  • Biological Unit Coordinates (1hz6.pdb3.gz) 12 Kb
  • Biological Unit Coordinates (1hz6.pdb4.gz) 35 Kb
  • Biological Unit Coordinates (1hz6.pdb5.gz) 23 Kb
  • CSU: Contacts of Structural Units for 1HZ6
  • Likely Quarternary Molecular Structure file(s) for 1HZ6
  • Structure Factors (319 Kb)
  • Retrieve 1HZ6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HZ6 from S2C, [Save to disk]
  • Re-refined 1hz6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1HZ6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HZ6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HZ6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hz6a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1hz6b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1hz6c_, region C [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hz6_B] [1hz6_A] [1hz6] [1hz6_C]
  • SWISS-PROT database: [Q51912]
  • Domain organization of [Q51912_PEPMA] by SWISSPFAM
  • Other resources with information on 1HZ6
  • Community annotation for 1HZ6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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