1I5H Ligase date Feb 27, 2001
title Solution Structure Of The Rnedd4 Wwiii Domain-Renal Bp2 Pept Complex
authors V.Kanelis, D.Rotin, J.D.Forman-Kay
compound source
Molecule: Ubiquitin Ligase Nedd4
Chain: W
Fragment: Wwiii Domain
Synonym: Rnedd4
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t2

Molecule: Amiloride-Sensitive Sodium Channel Beta-Subunit
Chain: B
Synonym: Renal Bp2 Peptide
Engineered: Yes

Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t2
Other_details: An Identical Peptide Was Made Synthetically Standard F-Moc Chemistry For Nmr Samples Requiring Unlabele Peptide.
methodSolution NMR
related structures by homologous chain: 1TK7
Primary referenceSolution structure of a Nedd4 WW domain-ENaC peptide complex., Kanelis V, Rotin D, Forman-Kay JD, Nat Struct Biol 2001 May;8(5):407-12. PMID:11323714
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (259 Kb) [Save to disk]
  • Biological Unit Coordinates (1i5h.pdb1.gz) 17 Kb
  • CSU: Contacts of Structural Units for 1I5H
  • Original NMR restraints for 1I5H from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1I5H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1I5H from S2C, [Save to disk]
  • View 1I5H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1I5H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1I5H, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1i5hw_, region W [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1i5h] [1i5h_W] [1i5h_B]
  • SWISS-PROT database: [Q62940] [P37090]
  • Domain organization of [NEDD4_RAT] [SCNNB_RAT] by SWISSPFAM
  • Domain found in 1I5H: [WW ] by SMART
  • Other resources with information on 1I5H
  • Community annotation for 1I5H at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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