1I7E Signaling Protein date Mar 08, 2001
title C-Terminal Domain Of Mouse Brain Tubby Protein Bound To Phosphatidylinositol 4,5-Bis-Phosphate
authors S.Santagata, T.J.Boggon, C.L.Baird, W.S.Shan, L.Shapiro
compound source
Molecule: Tubby Protein
Chain: A
Fragment: C-Terminal Domain
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.212 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.102 51.469 120.834 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand IBS enzyme
note 1I7E is a representative structure
related structures by homologous chain: 1C8Z, 1S31
Primary referenceG-protein signaling through tubby proteins., Santagata S, Boggon TJ, Baird CL, Gomez CA, Zhao J, Shan WS, Myszka DG, Shapiro L, Science. 2001 Jun 15;292(5524):2041-50. Epub 2001 May 24. PMID:11375483
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (1i7e.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 1I7E
  • CSU: Contacts of Structural Units for 1I7E
  • Likely Quarternary Molecular Structure file(s) for 1I7E
  • Structure Factors (218 Kb)
  • Retrieve 1I7E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1I7E from S2C, [Save to disk]
  • Re-refined 1i7e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1I7E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1I7E
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1I7E, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1i7ea_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1i7e_A] [1i7e]
  • SWISS-PROT database: [P50586]
  • Domain organization of [TUB_MOUSE] by SWISSPFAM
    • Other resources with information on 1I7E
  • Community annotation for 1I7E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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