1IIJ Signaling Protein date Apr 23, 2001
title Solution Structure Of The Neuerbb-2 Membrane Spanning Segme
authors M.Goetz, C.Carlotti, F.Bontems, E.J.Dufourc
compound source
Molecule: Erbb-2 Receptor Protein-Tyrosine Kinase
Chain: A
Fragment: Transmembrane Domain, Residues 650-684
Ec: 2.7.1.112
Engineered: Yes
 Synthetic: Yes
Other_details: This Peptide Was Chemically Synthesized. Thi Sequence Occurs Naturally In Rattus Norvegicus (Rat).
methodSolution NMR
ligand
enzyme Transferase E.C.2.7.1.112 BRENDA
note 1IIJ is a representative structure
Primary referenceEvidence for an alpha-helix --> pi-bulge helicity modulation for the neu/erbB-2 membrane-spanning segment. A 1H NMR and circular dichroism study., Goetz M, Carlotti C, Bontems F, Dufourc EJ, Biochemistry 2001 May 29;40(21):6534-40. PMID:11371217
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (1iij.pdb1.gz) 10 Kb
  • CSU: Contacts of Structural Units for 1IIJ
  • Retrieve 1IIJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1IIJ from S2C, [Save to disk]
    • View 1IIJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1IIJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1IIJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1iija_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1iij] [1iij_A]
  • SWISS-PROT database: [P06494]
  • Domain organization of [ERBB2_RAT] by SWISSPFAM
    • Other resources with information on 1IIJ
  • Community annotation for 1IIJ at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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