1IJE	Translation	date	Apr 26, 2001
title	Nucleotide Exchange Intermediates In The Eef1a-Eef1ba Comple
authors	G.R.Andersen, L.Valente, L.Pedersen, T.G.Kinzy, J.Nyborg
compound		source
Molecule: Elongation Factor 1-Alpha Chain: A Synonym: Eef1a		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932
Molecule: Elongation Factor 1-Beta Chain: B Fragment: Catalytical C-Terminal Fragment Synonym: Eef1ba Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Tef5 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: 834 De3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11d
symmetry	Space Group: P 21 21 21	R_factor 0.208 R_Free 0.250
crystal cell	length a length b length c angle alpha angle beta angle gamma 63.712 90.418 92.362 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	GDP	enzyme
related structures	by homologous chain: 1G7C, 1IJF
Gene Ontology	Chain Function Process Component A B
Primary reference	Crystal structures of nucleotide exchange intermediates in the eEF1A-eEF1Balpha complex., Andersen GR, Valente L, Pedersen L, Kinzy TG, Nyborg J, Nat Struct Biol 2001 Jun;8(6):531-4. PMID:11373622

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk] Biological Unit Coordinates (1ije.pdb1.gz) 84 Kb LPC: Ligand-Protein Contacts for 1IJE CSU: Contacts of Structural Units for 1IJE Likely Quarternary Molecular Structure file(s) for 1IJE Structure Factors (173 Kb) Retrieve 1IJE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1IJE from S2C, [Save to disk] Re-refined 1ije structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1IJE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1IJE

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1IJE, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ijea1, region A:241-334 [Jmol] [rasmolscript] [script source]     - Domain d1ijea2, region A:335-441 [Jmol] [rasmolscript] [script source]     - Domain d1ijea3, region A:4-240 [Jmol] [rasmolscript] [script source]     - Domain d1ijeb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ije_B] [1ije] [1ije_A] SWISS-PROT database: [P02994] [P32471] Domain organization of [EF1A_YEAST] [EF1B_YEAST] by SWISSPFAM Domain found in 1IJE: [EF1_GNE ] by SMART

Other resources with information on 1IJE

Community annotation for 1IJE at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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