1J0R Replication date Nov 20, 2002
title Crystal Structure Of The Replication Termination Protein Mut
authors J.P.Vivian, A.F.Hastings, I.G.Duggin, R.G.Wake, M.C.J.Wilce, J.A.
compound source
Molecule: Replication Termination Protein
Chain: A, B
Synonym: Replication Terminator Protein
Engineered: Yes
Mutation: Yes
Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-3
symmetry Space Group: C 1 2 1
R_factor 0.233 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.880 50.940 69.650 90.00 91.17 90.00
method X-Ray Diffractionresolution 2.50 Å
related structures by homologous chain: 1F4K
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe impact of single cysteine residue mutations on the replication terminator protein., Vivian JP, Hastings AF, Duggin IG, Wake RG, Wilce MC, Wilce JA, Biochem Biophys Res Commun 2003 Oct 31;310(4):1096-103. PMID:14559228
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (1j0r.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (1j0r.pdb2.gz) 40 Kb
  • CSU: Contacts of Structural Units for 1J0R
  • Likely Quarternary Molecular Structure file(s) for 1J0R
  • Structure Factors (119 Kb)
  • Retrieve 1J0R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J0R from S2C, [Save to disk]
  • Re-refined 1j0r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1J0R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1J0R
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1J0R, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j0ra_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1j0rb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j0r_A] [1j0r_B] [1j0r]
  • SWISS-PROT database: [P68732]
  • Domain organization of [RTP_BACSU] by SWISSPFAM
  • Other resources with information on 1J0R
  • Community annotation for 1J0R at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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