1J33 Transferase date Jan 17, 2003
title Crystal Structure Of Cobt From Thermus Thermophilus Hb8
authors N.Kunishima, Y.Asada, M.Miyano, Riken Structural Genomicsprote Initiative (Rsgi)
compound source
Molecule: Cobt
Chain: A
Engineered: Yes
Mutation: Yes
Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: C 2 2 21
R_factor 0.204 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.789 75.085 158.541 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
related structures by homologous chain: 1WX1
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (1j33.pdb1.gz) 106 Kb
  • CSU: Contacts of Structural Units for 1J33
  • Likely Quarternary Molecular Structure file(s) for 1J33
  • Structure Factors (167 Kb)
  • Retrieve 1J33 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J33 from S2C, [Save to disk]
  • Re-refined 1j33 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1J33 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1J33
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1J33, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j33a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j33] [1j33_A]
  • SWISS-PROT database: [Q7SIC7]
  • Domain organization of [COBT_THET8] by SWISSPFAM
  • Other resources with information on 1J33
  • Community annotation for 1J33 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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