1J3W Structural Genomics, Unknown Function date Feb 18, 2003
title Structure Of Gliding Protein-Mglb From Thermus Thermophilus
authors N.K.Lokanath, N.Kunishima, M.Miyano, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Giding Protein-Mglb
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: C 2 2 21
R_factor 0.208 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.982 117.186 111.467 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand MES, MG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (1j3w.pdb1.gz) 92 Kb
  • Biological Unit Coordinates (1j3w.pdb2.gz) 182 Kb
  • LPC: Ligand-Protein Contacts for 1J3W
  • CSU: Contacts of Structural Units for 1J3W
  • Likely Quarternary Molecular Structure file(s) for 1J3W
  • Structure Factors (820 Kb)
  • Retrieve 1J3W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J3W from S2C, [Save to disk]
  • Re-refined 1j3w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1J3W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1J3W
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1J3W 1J3WA 1J3WB 1J3WC 1J3WD from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1J3W, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j3wa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1j3wb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1j3wc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1j3wd_, region D [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j3w_C] [1j3w_B] [1j3w_A] [1j3w] [1j3w_D]
  • SWISS-PROT database: [Q9X9L0]
  • Domain organization of [Q9X9L0_THETH] by SWISSPFAM
  • Domain found in 1J3W: [Robl_LC7 ] by SMART
    • Other resources with information on 1J3W
  • Community annotation for 1J3W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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