1J5N	Dna Binding Protein Dna	date	May 15, 2002
title	Solution Structure Of The Non-Sequence-Specific Hmgb Protein Complex With Sry Dna
authors	J.E.Masse, B.Wong, Y.M.Yen, F.H.T.Allain, R.C.Johnson, J.Feigon
compound		source
Molecule: 5'-D(Gpgpgpgptpgpaptptpgptptpcpapg Chain: B Engineered: Yes Other_details: Sry_dna G-Rich Strand		Synthetic: Yes Other_details: Unlabeled Dna Made On A Commercial Synthesiz 13c-Labeled Dna Made Enzymatically In Vitro With Taq Polyme
Molecule: 5'-D(Cptpgpapapcpapaptpcpapcpcpcpc Chain: C Engineered: Yes Other_details: Sry_dna C-Rich Strand		Synthetic: Yes Other_details: Unlabeled Dna Made On A Commercial Synthesiz 13c-Labeled Dna Made Enzymatically In Vitro With Taq Polyme
Molecule: Nonhistone Chromosomal Protein 6a Chain: A Synonym: Nhp6a Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Expression_system: Escherichia Coli Expression_system_taxid: 562
method	Solution NMR
related structures	by homologous chain: 1CG7
Gene Ontology	Chain Function Process Component A MutSalpha complex binding
Primary reference	The S. cerevisiae architectural HMGB protein NHP6A complexed with DNA: DNA and protein conformational changes upon binding., Masse JE, Wong B, Yen YM, Allain FH, Johnson RC, Feigon J, J Mol Biol 2002 Oct 18;323(2):263-84. PMID:12381320

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (804 Kb) [Save to disk] Biological Unit Coordinates (1j5n.pdb1.gz) 41 Kb CSU: Contacts of Structural Units for 1J5N Original NMR restraints for 1J5N from PDB Experimental data, such as chemical shifts, at BioMagResBank (BMRB) NMR Restraints Grid from BioMagResBank (BMRB) Retrieve 1J5N in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1J5N from S2C, [Save to disk]

View 1J5N in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1J5N

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1J5N, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1j5na_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1j5n_A] [1j5n_C] [1j5n_B] [1j5n] SWISS-PROT database: [P11632] Domain organization of [NHP6A_YEAST] by SWISSPFAM Domain found in 1J5N: [HMG ] by SMART

Other resources with information on 1J5N

Community annotation for 1J5N at PDBWiki (http://pdbwiki.org) NMR Ensemble (OLDERADO: core, domain and representative structure database) MMDB (Entrez's Structure Database)

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