1J5Y Crystal structure of transcriptional regulator (TM1602) from Thermotoga maritima at 2.3 A resolution date
authors JCSG, Joint.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand K, MSE, NI enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of a transcription regulator (TM1602) from Thermotoga maritima at 2.3 A resolution., Weekes D, Miller MD, Krishna SS, McMullan D, McPhillips TM, Acosta C, Canaves JM, Elsliger MA, Floyd R, Grzechnik SK, Jaroszewski L, Klock HE, Koesema E, Kovarik JS, Kreusch A, Morse AT, Quijano K, Spraggon G, van den Bedem H, Wolf G, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA, Proteins. 2007 Apr 1;67(1):247-52. PMID:17256761
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (1j5y.pdb1.gz) 30 Kb
  • Biological Unit Coordinates (1j5y.pdb2.gz) 114 Kb
  • LPC: Ligand-Protein Contacts for 1J5Y
  • CSU: Contacts of Structural Units for 1J5Y
  • Likely Quarternary Molecular Structure file(s) for 1J5Y
  • Structure Factors (87 Kb)
  • Retrieve 1J5Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J5Y from S2C, [Save to disk]
  • Re-refined 1j5y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1J5Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1J5Y
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1J5Y, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j5ya1, region A:3-67 [Jmol] [rasmolscript] [script source]
        - Domain d1j5ya2, region A:68-174 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j5y_A] [1j5y]
  • SWISS-PROT database: [Q9X1T8]
  • Domain organization of [Q9X1T8_THEMA] by SWISSPFAM
    • Other resources with information on 1J5Y
  • Community annotation for 1J5Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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