1J85	Transferase	date	May 20, 2001
title	Structure Of Yibk From Haemophilus Influenzae (Hi0766), A Tr Sequence Homolog Of Trna (Guanosine-2'-O-) Methyltransferas
authors	K.Lim, H.Zhang, J.Toedt, A.Tempcyzk, W.Krajewski, A.Howard, E.Eise O.Herzberg, Structure 2 Function Project (S2f)
compound		source
Molecule: Yibk Chain: A Synonym: Hypothetical Trnarrna Methyltransferase Hi0766 Ec: 2.1.1.- Engineered: Yes		Organism_scientific: Haemophilus Influenzae Rd Organism_taxid: 71421 Strain: Kw20 Gene: Hi0766 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Pet17b
symmetry	Space Group: P 41 21 2	R_factor 0.195 R_Free 0.263
crystal cell	length a length b length c angle alpha angle beta angle gamma 40.370 40.370 165.820 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand		enzyme	Transferase E.C.2.1.1 BRENDA
related structures	by homologous chain: 1MXI
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of the YibK methyltransferase from Haemophilus influenzae (HI0766): a cofactor bound at a site formed by a knot., Lim K, Zhang H, Tempczyk A, Krajewski W, Bonander N, Toedt J, Howard A, Eisenstein E, Herzberg O, Proteins 2003 Apr 1;51(1):56-67. PMID:12596263

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk] Biological Unit Coordinates (1j85.pdb1.gz) 55 Kb CSU: Contacts of Structural Units for 1J85 Likely Quarternary Molecular Structure file(s) for 1J85 Structure Factors (71 Kb) Retrieve 1J85 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1J85 from S2C, [Save to disk] Re-refined 1j85 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1J85, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1j85a_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1j85] [1j85_A] SWISS-PROT database: [P44868] Domain organization of [Y766_HAEIN] by SWISSPFAM

Other resources with information on 1J85

Community annotation for 1J85 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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