1J8R Structural Protein date May 22, 2001
title Binary Complex Of The Papg Receptor-Binding Domain Bound To Receptor
authors K.W.Dodson, J.S.Pinkner, T.Rose, G.Magnusson, S.J.Hultgren, G.Wak Midwest Center For Structural Genomics (Mcsg)
compound source
Molecule: Pyelonephritic Adhesin
Chain: A
Fragment: Papg Receptor-Binding Domain
Synonym: Papg Adhesin
Other_details: Complexed With Nag-Gal-Gal-Glu
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: I 2 2 2
R_factor 0.220 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.080 79.672 158.028 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand BGC, GAL, GLA, MSE, NGA enzyme
related structures by homologous chain: 1J8S
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis of the interaction of the pyelonephritic E. coli adhesin to its human kidney receptor., Dodson KW, Pinkner JS, Rose T, Magnusson G, Hultgren SJ, Waksman G, Cell 2001 Jun 15;105(6):733-43. PMID:11440716
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (1j8r.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 1J8R
  • CSU: Contacts of Structural Units for 1J8R
  • Likely Quarternary Molecular Structure file(s) for 1J8R
  • Retrieve 1J8R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J8R from S2C, [Save to disk]
    • View 1J8R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1J8R
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1J8R, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j8ra_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j8r_A] [1j8r]
  • SWISS-PROT database: [Q47450]
  • Domain organization of [Q47450_ECOLX] by SWISSPFAM
    • Other resources with information on 1J8R
  • Community annotation for 1J8R at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science