1J8S Structural Protein date May 22, 2001
title Papg Adhesin Receptor Binding Domain-Unbound Form
authors K.W.Dodson, J.S.Pinkner, T.Rose, G.Magnusson, S.J.Hultgren, G.Waksman
compound source
Molecule: Pyelonephritic Adhesin
Chain: A
Fragment: Papg Receptor-Binding Domain
Synonym: Papg Adhesin
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: I 2 2 2
R_factor 0.232 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.130 78.260 158.410 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand MSE enzyme
related structures by homologous chain: 1J8R
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis of the interaction of the pyelonephritic E. coli adhesin to its human kidney receptor., Dodson KW, Pinkner JS, Rose T, Magnusson G, Hultgren SJ, Waksman G, Cell 2001 Jun 15;105(6):733-43. PMID:11440716
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (1j8s.pdb1.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 1J8S
  • CSU: Contacts of Structural Units for 1J8S
  • Likely Quarternary Molecular Structure file(s) for 1J8S
  • Retrieve 1J8S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J8S from S2C, [Save to disk]
    • View 1J8S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1J8S
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1J8S, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j8sa_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j8s_A] [1j8s]
  • SWISS-PROT database: [Q47450]
  • Domain organization of [Q47450_ECOLX] by SWISSPFAM
    • Other resources with information on 1J8S
  • Community annotation for 1J8S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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