1JDR	Oxidoreductase	date	Jun 14, 2001
title	Crystal Structure Of A Proximal Domain Potassium Binding Var Cytochrome C Peroxidase
authors	C.A.Bonagura, M.Sundaramoorthy, B.Bhaskar, T.L.Poulos
compound		source
Molecule: Cytochrome C Peroxidase Chain: A Synonym: Ccp Ec: 1.11.1.5 Engineered: Yes Mutation: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Opbyc Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21de3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pt7
symmetry	Space Group: P 21 21 21	R_factor 0.197 R_Free 0.234
crystal cell	length a length b length c angle alpha angle beta angle gamma 106.717 75.531 51.256 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	HEM, K	enzyme	Oxidoreductase E.C.1.11.1.5 BRENDA
related structures	by homologous chain: 1S73, 1ZBZ
Gene Ontology	Chain Function Process Component A
Primary reference	The effects of an engineered cation site on the structure, activity, and EPR properties of cytochrome c peroxidase., Bonagura CA, Sundaramoorthy M, Bhaskar B, Poulos TL, Biochemistry 1999 Apr 27;38(17):5538-45. PMID:10220341

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk] Biological Unit Coordinates (1jdr.pdb1.gz) 90 Kb LPC: Ligand-Protein Contacts for 1JDR CSU: Contacts of Structural Units for 1JDR Likely Quarternary Molecular Structure file(s) for 1JDR Structure Factors (475 Kb) Retrieve 1JDR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1JDR from S2C, [Save to disk] Re-refined 1jdr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1JDR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1JDR

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1JDR from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1JDR, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1jdra_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jdr_A] [1jdr] SWISS-PROT database: [P00431] Domain organization of [CCPR_YEAST] by SWISSPFAM

Other resources with information on 1JDR

Community annotation for 1JDR at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---