1JDS	Transferase	date	Jun 15, 2001
title	5'-Deoxy-5'-Methylthioadenosine Phosphorylase Complex With P (Space Group P21)
authors	T.C.Appleby, I.I.Mathews, M.Porcelli, G.Cacciapuoti, S.E.Ealick
compound		source
Molecule: 5'-Methylthioadenosine Phosphorylase Chain: A, B, C, D, E, F Synonym: Mta Phosphorylase; Mtap Ec: 2.4.2.28 Engineered: Yes		Organism_scientific: Sulfolobus Solfataricus Organism_taxid: 2287 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1 21 1	R_factor 0.220 R_Free 0.249
crystal cell	length a length b length c angle alpha angle beta angle gamma 101.500 86.200 102.100 90.00 119.20 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	PO4, TRS	enzyme	Transferase E.C.2.4.2.28 BRENDA
related structures	by homologous chain: 1JE1, 1JPV
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	Three-dimensional structure of a hyperthermophilic 5'-deoxy-5'-methylthioadenosine phosphorylase from Sulfolobus solfataricus., Appleby TC, Mathews II, Porcelli M, Cacciapuoti G, Ealick SE, J Biol Chem 2001 Oct 19;276(42):39232-42. PMID:11489901

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (222 Kb) [Save to disk] Biological Unit Coordinates (1jds.pdb1.gz) 217 Kb LPC: Ligand-Protein Contacts for 1JDS CSU: Contacts of Structural Units for 1JDS Likely Quarternary Molecular Structure file(s) for 1JDS Retrieve 1JDS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1JDS from S2C, [Save to disk]

View 1JDS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1JDS

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1JDS, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1jdsa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1jdsb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1jdsc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1jdsd_, region D [Jmol] [rasmolscript] [script source]     - Domain d1jdse_, region E [Jmol] [rasmolscript] [script source]     - Domain d1jdsf_, region F [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jds_D] [1jds] [1jds_E] [1jds_F] [1jds_B] [1jds_C] [1jds_A] SWISS-PROT database: [P50389] Domain organization of [MTAP_SULSO] by SWISSPFAM

Other resources with information on 1JDS

Community annotation for 1JDS at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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