1JFR Serine Hydrolase date Jul 11, 1997
title Crystal Structure Of The Streptomyces Exfoliatus Lipase At 1.9a Resolution: A Model For A Family Of Platelet- Activating Factor Acetylhydrolases
authors Y.Wei, Z.S.Derewenda
compound source
Molecule: Lipase
Chain: A, B
Engineered: Yes
Organism_scientific: Streptomyces Exfoliatus
Organism_taxid: 1905
Gene: Streptomyces Exfoliatus
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_gene: Streptomyces Exfoliatus
symmetry Space Group: P 1 21 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.500 53.000 81.100 90.00 95.80 90.00
method X-Ray Diffractionresolution 1.90 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of a microbial homologue of mammalian platelet-activating factor acetylhydrolases: Streptomyces exfoliatus lipase at 1.9 A resolution., Wei Y, Swenson L, Castro C, Derewenda U, Minor W, Arai H, Aoki J, Inoue K, Servin-Gonzalez L, Derewenda ZS, Structure 1998 Apr 15;6(4):511-9. PMID:9562561
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (1jfr.pdb1.gz) 46 Kb
  • Biological Unit Coordinates (1jfr.pdb2.gz) 46 Kb
  • CSU: Contacts of Structural Units for 1JFR
  • Likely Quarternary Molecular Structure file(s) for 1JFR
  • Retrieve 1JFR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JFR from S2C, [Save to disk]
  • View 1JFR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JFR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JFR, from MSDmotif at EBI
  • Genome occurence of 1JFR's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jfra_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jfrb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jfr_B] [1jfr] [1jfr_A]
  • SWISS-PROT database: [Q56008]
  • Domain organization of [Q56008_STRSQ] by SWISSPFAM
  • Other resources with information on 1JFR
  • Community annotation for 1JFR at PDBWiki (http://pdbwiki.org)
  • LED, table of lipase structures from Lipase Engineering Database.
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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