1JGD	Immune System	date	Jun 25, 2001
title	Hla-B2709 Bound To Deca-Peptide S10r
authors	R.C.Hillig, M.Huelsmeyer, W.Saenger, A.Volz, B.Uchanska-Ziegler,
compound		source
Molecule: Human Lymphocyte Antigen Hla-B27 Chain: A Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hla-B Or Hlab Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Beta-2-Microglobulin Chain: B Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: B2m Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Peptide S10r Chain: C Engineered: Yes		Synthetic: Yes Other_details: This Peptide Was Chemically Synthesized.
symmetry	Space Group: C 1 2 1	R_factor 0.169 R_Free 0.194
crystal cell	length a length b length c angle alpha angle beta angle gamma 129.844 48.438 88.532 90.00 121.29 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	GOL	enzyme
related structures	by homologous chain: 1JF1, 1WBX
Gene Ontology	Chain Function Process Component B cellular response to iron io...
Primary reference	Thermodynamic and structural analysis of peptide- and allele-dependent properties of two HLA-B27 subtypes exhibiting differential disease association., Hillig RC, Hulsmeyer M, Saenger W, Welfle K, Misselwitz R, Welfle H, Kozerski C, Volz A, Uchanska-Ziegler B, Ziegler A, J Biol Chem 2004 Jan 2;279(1):652-63. Epub 2003 Oct 10. PMID:14555655

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk] Biological Unit Coordinates (1jgd.pdb1.gz) 74 Kb LPC: Ligand-Protein Contacts for 1JGD CSU: Contacts of Structural Units for 1JGD Likely Quarternary Molecular Structure file(s) for 1JGD Structure Factors (295 Kb) Retrieve 1JGD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1JGD from S2C, [Save to disk] Re-refined 1jgd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1JGD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1JGD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1JGD, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1jgda2, region A:1-181 [Jmol] [rasmolscript] [script source]     - Domain d1jgda1, region A:182-276 [Jmol] [rasmolscript] [script source]     - Domain d1jgdb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jgd_B] [1jgd_C] [1jgd] [1jgd_A] SWISS-PROT database: [P03989] [P61769] Domain organization of [1B27_HUMAN] [B2MG_HUMAN] by SWISSPFAM Domain found in 1JGD: [IGc1 ] by SMART

Other resources with information on 1JGD

Community annotation for 1JGD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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