1JKM	Serine Hydrolase	date	Feb 04, 1998
title	Brefeldin A Esterase, A Bacterial Homologue Of Human Hormone Lipase
authors	Y.Wei, A.J.Contreras, P.Sheffield, T.Osterlund, U.Derewenda, U.O. Z.S.Derewenda
compound		source
Molecule: Brefeldin A Esterase Chain: A, B Engineered: Yes		Organism_scientific: Bacillus Subtilis Organism_taxid: 1423 Cell_line: 293 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: 293 Expression_system_vector_type: Bacterial
symmetry	Space Group: C 1 2 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 140.700 82.600 81.500 90.00 112.50 90.00
method	X-Ray Diffraction	resolution	1.85 Å
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structure of brefeldin A esterase, a bacterial homolog of the mammalian hormone-sensitive lipase., Wei Y, Contreras JA, Sheffield P, Osterlund T, Derewenda U, Kneusel RE, Matern U, Holm C, Derewenda ZS, Nat Struct Biol 1999 Apr;6(4):340-5. PMID:10201402

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk] Biological Unit Coordinates (1jkm.pdb1.gz) 233 Kb CSU: Contacts of Structural Units for 1JKM Likely Quarternary Molecular Structure file(s) for 1JKM Retrieve 1JKM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1JKM from S2C, [Save to disk]

View 1JKM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1JKM

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1JKM, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1jkma_, region A [Jmol] [rasmolscript] [script source]     - Domain d1jkmb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jkm_A] [1jkm] [1jkm_B] SWISS-PROT database: [O68884] Domain organization of [O68884_BACSU] by SWISSPFAM

Other resources with information on 1JKM

Community annotation for 1JKM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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