1JKV Oxidoreductase date Jul 13, 2001
title Crystal Structure Of Manganese Catalase From Lactobacillus P Complexed With Azide
authors V.V.Barynin, M.M.Whittaker, S.V.Antonyuk, V.S.Lamzin, P.M.Harris P.J.Artymiuk, J.W.Whittaker
compound source
Molecule: Pseudocatalase
Chain: A, B, C, D, E, F
Synonym: Manganese-Containing Catalase
Ec: 1.11.1.6
 Organism_scientific: Lactobacillus Plantarum
Organism_taxid: 1590
Strain: Atcc 14431
Atcc: 14431
symmetry Space Group: P 1 21 1
R_factor 0.104 R_Free 0.130
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.210 95.550 106.110 90.00 106.18 90.00
method X-Ray Diffractionresolution 1.39 Å
ligand AZI, CA, EDO, MN3, OH enzyme Oxidoreductase E.C.1.11.1.6 BRENDA
note 1JKV is a representative structure
related structures by homologous chain: 1JKU, 1O9I
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B
  • catalase activity
  • peroxidase activity


    • Primary referenceCrystal structure of manganese catalase from Lactobacillus plantarum., Barynin VV, Whittaker MM, Antonyuk SV, Lamzin VS, Harrison PM, Artymiuk PJ, Whittaker JW, Structure (Camb) 2001 Aug;9(8):725-38. PMID:11587647
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (558 Kb) [Save to disk]
  • Biological Unit Coordinates (1jkv.pdb1.gz) 549 Kb
  • LPC: Ligand-Protein Contacts for 1JKV
  • CSU: Contacts of Structural Units for 1JKV
  • Likely Quarternary Molecular Structure file(s) for 1JKV
  • Retrieve 1JKV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JKV from S2C, [Save to disk]
    • View 1JKV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1JKV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1JKV 1JKVA 1JKVB 1JKVC 1JKVD 1JKVE 1JKVF from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JKV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jkva_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jkvb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1jkvc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1jkvd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1jkve_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1jkvf_, region F [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jkv_E] [1jkv_B] [1jkv_F] [1jkv] [1jkv_D] [1jkv_A] [1jkv_C]
  • SWISS-PROT database: [P60355]
  • Domain organization of [MCAT_LACPL] by SWISSPFAM
    • Other resources with information on 1JKV
  • Community annotation for 1JKV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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