1JMQ	Structural Protein	date	Jul 19, 2001
title	Yap65 (L30k Mutant) Ww Domain In Complex With Gtppppytvg Pep
authors	J.R.Pires, F.Taha-Nejad, F.Toepert, T.Ast, U.Hoffmuller, J.Schnei Mergener, R.Kuhne, M.J.Macias, H.Oschkinat
compound		source
Molecule: 65 Kda Yes-Associated Protein Chain: A Synonym: Yap65 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Yap65 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgat2
Molecule: Ww Domain Binding Protein-1 Chain: P Fragment: Residues 147-156 Synonym: Wbp-1 Engineered: Yes		Synthetic: Yes Other_details: This Peptide Was Chemically Synthesized. The Of The Peptide Is Naturally Found In Homo Sapiens (Human).
method	Solution NMR
related structures	by homologous chain: 1K5R
Primary reference	Solution structures of the YAP65 WW domain and the variant L30 K in complex with the peptides GTPPPPYTVG, N-(n-octyl)-GPPPY and PLPPY and the application of peptide libraries reveal a minimal binding epitope., Pires JR, Taha-Nejad F, Toepert F, Ast T, Hoffmuller U, Schneider-Mergener J, Kuhne R, Macias MJ, Oschkinat H, J Mol Biol 2001 Dec 14;314(5):1147-56. PMID:11743730

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (292 Kb) [Save to disk] Biological Unit Coordinates (1jmq.pdb1.gz) 15 Kb CSU: Contacts of Structural Units for 1JMQ Original NMR restraints for 1JMQ from PDB Retrieve 1JMQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1JMQ from S2C, [Save to disk]

View 1JMQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1JMQ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1JMQ, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1jmqa_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jmq_A] [1jmq_P] [1jmq] SWISS-PROT database: [P46937] Domain organization of [YAP1_HUMAN] by SWISSPFAM Domain found in 1JMQ: [WW ] by SMART

Other resources with information on 1JMQ

Community annotation for 1JMQ at PDBWiki (http://pdbwiki.org) NMR Ensemble (OLDERADO: core, domain and representative structure database) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---