1JO4 Gramicidin C in Sodium Dodecyl Sulfate Micelles (NMR) date
authors Townsley, L.E., Tucker, W.A., Hinton, J.F.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand DLE, DVA, ETA, FVA enzyme
Primary referenceStructures of gramicidins A, B, and C incorporated into sodium dodecyl sulfate micelles., Townsley LE, Tucker WA, Sham S, Hinton JF, Biochemistry 2001 Oct 2;40(39):11676-86. PMID:11570868
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (14 Kb) [Save to disk]
  • Biological Unit Coordinates (1jo4.pdb1.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 1JO4
  • CSU: Contacts of Structural Units for 1JO4
  • Retrieve 1JO4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JO4 from S2C, [Save to disk]
  • View 1JO4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JO4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JO4, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jo4a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jo4b_, region B [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jo4_A] [1jo4] [1jo4_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1JO4
  • Community annotation for 1JO4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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