1JQM Ribosome date Aug 07, 2001
title Fitting Of L11 Protein And Elongation Factor G (Ef-G) In The Map Of E. Coli 70s Ribosome Bound With Ef-G, Gdp And Fusidi
authors R.K.Agrawal, J.Linde, J.Segupta, K.H.Nierhaus, J.Frank
compound source
Molecule: 50s Ribosomal Protein L11
Chain: A
Other_details: L11 From E. Coli 70s Ribosome Modeled By Cry Structure Of L11 From Thermatogoma Maritima;
 Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Elongation Factor G
Chain: B
Synonym: Ef-G; Translation Elongation Factor Ef-G
Other_details: Ef-G From E. Coli 70s Ribosome Modeled By Cr Structure Of Ef-G From Thermus Thermophilus
Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 18.00 Å
related structures by homologous chain: 1EFG, 1JQS, 1OLN
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceLocalization of L11 protein on the ribosome and elucidation of its involvement in EF-G-dependent translocation., Agrawal RK, Linde J, Sengupta J, Nierhaus KH, Frank J, J Mol Biol 2001 Aug 24;311(4):777-87. PMID:11518530
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (20 Kb) [Save to disk]
  • Biological Unit Coordinates (1jqm.pdb1.gz) 17 Kb
  • CSU: Contacts of Structural Units for 1JQM
  • Likely Quarternary Molecular Structure file(s) for 1JQM
  • Retrieve 1JQM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JQM from S2C, [Save to disk]
    • View 1JQM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1JQM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JQM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jqma_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jqmb_, region B [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jqm] [1jqm_B] [1jqm_A]
  • SWISS-PROT database: [P13551] [P29395]
  • Domain organization of [EFG_THETH] [RL11_THEMA] by SWISSPFAM
  • Domains found in 1JQM: [EFG_C] [EFG_IV] [RL11 ] by SMART
    • Other resources with information on 1JQM
  • Community annotation for 1JQM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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